IL_9GHF_138

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_138 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|U|1864
9GHF|1|a|U|1865
9GHF|1|a|A|1866
9GHF|1|a|G|1867
*
9GHF|1|a|C|1874
9GHF|1|a|G|1875
9GHF|1|a|A|1876
9GHF|1|a|A|1877
9GHF|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains