IL_9GHG_051

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9GHG|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_051 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0942

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9GHG|1|A|G|1356
9GHG|1|A|G|1357
9GHG|1|A|A|1358
9GHG|1|A|A|1359
9GHG|1|A|G|1360
*
9GHG|1|A|C|1368
9GHG|1|A|G|1369
9GHG|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23