IL_9GHG_076

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_076 not in the Motif Atlas

Homologous match to IL_9DFE_075

Geometric discrepancy: 0.0929

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9GHG|1|A|A|1883
9GHG|1|A|G|1884
9GHG|1|A|G|1885
9GHG|1|A|A|1886
9GHG|1|A|G|1887
*
9GHG|1|A|C|1909
9GHG|1|A|G|1910
9GHG|1|A|A|1911
9GHG|1|A|A|1912
9GHG|1|A|U|1913

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA