IL_9GHG_079
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 9GHG|1|A|A|1965, 9GHG|1|A|U|1971, 9GHG|1|A|C|1990
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GHG_079 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.1459
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9GHG|1|A|C|1961
9GHG|1|A|G|1962
9GHG|1|A|A|1963
9GHG|1|A|A|1964
9GHG|1|A|A|1965
9GHG|1|A|5MU|1966
9GHG|1|A|U|1967
9GHG|1|A|C|1968
9GHG|1|A|C|1969
9GHG|1|A|U|1970
9GHG|1|A|U|1971
9GHG|1|A|G|1972
*
9GHG|1|A|C|1988
9GHG|1|A|C|1989
9GHG|1|A|C|1990
9GHG|1|A|G|1991
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: