IL_9GHG_096

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9GHG|1|A|G|2603, 9GHG|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_096 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0635

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

9GHG|1|A|C|2537
9GHG|1|A|U|2538
9GHG|1|A|C|2539
*
9GHG|1|A|G|2601
9GHG|1|A|C|2602
9GHG|1|A|G|2603
9GHG|1|A|A|2604
9GHG|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

50S ribosomal protein L3