IL_9GHG_162

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAUC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_162 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2798

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9GHG|1|a|C|1140
9GHG|1|a|A|1141
9GHG|1|a|U|1142
9GHG|1|a|C|1143
*
9GHG|1|a|G|1152
9GHG|1|a|G|1153

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

Small ribosomal subunit protein uS10