IL_9GJ5_007

3D structure

PDB id

9GJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in distal position and Ebp1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9GJ5|1|1|G|666, 9GJ5|1|1|A|667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ5_007 not in the Motif Atlas

Homologous match to IL_8GLP_028

Geometric discrepancy: 0.547

The information below is about IL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9GJ5|1|1|G|487
9GJ5|1|1|G|488
*
9GJ5|1|1|C|665
9GJ5|1|1|G|666
9GJ5|1|1|A|667
9GJ5|1|1|C|668
9GJ5|1|1|C|669

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28