IL_9GR1_009

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_009 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.148

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9GR1|1|A|C|132
9GR1|1|A|U|133
9GR1|1|A|G|134
9GR1|1|A|C|135
9GR1|1|A|C|136
*
9GR1|1|A|G|227
9GR1|1|A|A|228
9GR1|1|A|U|229
9GR1|1|A|G|230

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20