IL_9GR1_021

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9GR1|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_021 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2206

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GR1|1|A|G|446
9GR1|1|A|G|447
9GR1|1|A|A|448
9GR1|1|A|G|449
9GR1|1|A|G|450
*
9GR1|1|A|C|483
9GR1|1|A|G|484
9GR1|1|A|U|485
9GR1|1|A|U|486
9GR1|1|A|A|487
9GR1|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

30S ribosomal protein S16