IL_9GR1_083

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_083 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.0791

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9GR1|1|a|U|705
9GR1|1|a|G|706
9GR1|1|a|A|707
9GR1|1|a|A|708
9GR1|1|a|G|709
*
9GR1|1|a|U|726
9GR1|1|a|G|727
9GR1|1|a|G|728
9GR1|1|a|A|729
9GR1|1|a|G|730

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2