IL_9GR1_159

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

9GR1|1|a|A|2576, 9GR1|1|a|C|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_159 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0516

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9GR1|1|a|C|2516
9GR1|1|a|A|2517
*
9GR1|1|a|U|2575
9GR1|1|a|A|2576
9GR1|1|a|C|2577
9GR1|1|a|G|2578

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3

Chain i

50S ribosomal protein L13