IL_9GR1_169

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_169 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0709

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

9GR1|1|a|C|2810
9GR1|1|a|U|2811
9GR1|1|a|G|2812
9GR1|1|a|A|2813
9GR1|1|a|A|2814
9GR1|1|a|G|2815
*
9GR1|1|a|C|2893
9GR1|1|a|G|2894
9GR1|1|a|U|2895
9GR1|1|a|G|2896

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32