IL_9GR1_172

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_172 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0424

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9GR1|1|a|U|2851
9GR1|1|a|G|2852
9GR1|1|a|U|2853
9GR1|1|a|A|2854
9GR1|1|a|A|2855
9GR1|1|a|G|2856
*
9GR1|1|a|U|2869
9GR1|1|a|U|2870
9GR1|1|a|G|2871
9GR1|1|a|A|2872
9GR1|1|a|G|2873

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19