IL_9GUL_125

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(5MU)GAGGC*GCUC

Length

11 nucleotides

Bulged bases

9GUL|1|L5|G|4084, 9GUL|1|L5|G|4086, 9GUL|1|L5|G|4087, 9GUL|1|L5|C|4162, 9GUL|1|L5|U|4163

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|G|4082
9GUL|1|L5|5MU|4083
9GUL|1|L5|G|4084
9GUL|1|L5|A|4085
9GUL|1|L5|G|4086
9GUL|1|L5|G|4087
9GUL|1|L5|C|4088
*
9GUL|1|L5|G|4161
9GUL|1|L5|C|4162
9GUL|1|L5|U|4163
9GUL|1|L5|C|4164

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a