IL_9GUP_020

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUP_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GUP|1|A|U|409
9GUP|1|A|G|410
9GUP|1|A|A|411
9GUP|1|A|A|412
9GUP|1|A|G|413
9GUP|1|A|A|414
9GUP|1|A|A|415
9GUP|1|A|G|416
*
9GUP|1|A|U|427
9GUP|1|A|G|428
9GUP|1|A|U|429
9GUP|1|A|A|430
9GUP|1|A|A|431
9GUP|1|A|A|432
9GUP|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4