IL_9GUP_060

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUP_060 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.1049

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9GUP|1|A|C|1412
9GUP|1|A|A|1413
9GUP|1|A|U|1414
*
9GUP|1|A|G|1486
9GUP|1|A|G|1487
9GUP|1|A|G|1488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S12