IL_9GUQ_020

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUQ_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1001

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GUQ|1|A|U|409
9GUQ|1|A|G|410
9GUQ|1|A|A|411
9GUQ|1|A|A|412
9GUQ|1|A|G|413
9GUQ|1|A|A|414
9GUQ|1|A|A|415
9GUQ|1|A|G|416
*
9GUQ|1|A|U|427
9GUQ|1|A|G|428
9GUQ|1|A|U|429
9GUQ|1|A|A|430
9GUQ|1|A|A|431
9GUQ|1|A|A|432
9GUQ|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4