IL_9GUS_020

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUS_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0973

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GUS|1|A|U|409
9GUS|1|A|G|410
9GUS|1|A|A|411
9GUS|1|A|A|412
9GUS|1|A|G|413
9GUS|1|A|A|414
9GUS|1|A|A|415
9GUS|1|A|G|416
*
9GUS|1|A|U|427
9GUS|1|A|G|428
9GUS|1|A|U|429
9GUS|1|A|A|430
9GUS|1|A|A|431
9GUS|1|A|A|432
9GUS|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4