3D structure

PDB id
9GUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex (bS1 resolved)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUT_020 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.0791
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

9GUT|1|A|U|409
9GUT|1|A|G|410
9GUT|1|A|A|411
9GUT|1|A|A|412
9GUT|1|A|G|413
9GUT|1|A|A|414
9GUT|1|A|A|415
9GUT|1|A|G|416
*
9GUT|1|A|U|427
9GUT|1|A|G|428
9GUT|1|A|U|429
9GUT|1|A|A|430
9GUT|1|A|A|431
9GUT|1|A|A|432
9GUT|1|A|G|433

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
Small ribosomal subunit protein uS4

Coloring options:


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