IL_9GUT_056

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUT_056 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9GUT|1|A|C|1303
9GUT|1|A|G|1304
9GUT|1|A|G|1305
9GUT|1|A|A|1306
9GUT|1|A|U|1307
9GUT|1|A|U|1308
*
9GUT|1|A|A|1329
9GUT|1|A|U|1330
9GUT|1|A|G|1331
9GUT|1|A|A|1332
9GUT|1|A|A|1333
9GUT|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13