IL_9GUU_020

3D structure

PDB id

9GUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUU_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0906

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GUU|1|A|U|409
9GUU|1|A|G|410
9GUU|1|A|A|411
9GUU|1|A|A|412
9GUU|1|A|G|413
9GUU|1|A|A|414
9GUU|1|A|A|415
9GUU|1|A|G|416
*
9GUU|1|A|U|427
9GUU|1|A|G|428
9GUU|1|A|U|429
9GUU|1|A|A|430
9GUU|1|A|A|431
9GUU|1|A|A|432
9GUU|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4