IL_9GUV_022

3D structure

PDB id

9GUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (closed-head)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9GUV|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUV_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1692

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GUV|1|A|G|446
9GUV|1|A|G|447
9GUV|1|A|A|448
9GUV|1|A|G|449
9GUV|1|A|G|450
*
9GUV|1|A|C|483
9GUV|1|A|G|484
9GUV|1|A|U|485
9GUV|1|A|U|486
9GUV|1|A|A|487
9GUV|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4

Chain Q

30S ribosomal protein S16