IL_9GUX_026

3D structure

PDB id

9GUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUX_026 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1074

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GUX|1|A|U|409
9GUX|1|A|G|410
9GUX|1|A|A|411
9GUX|1|A|A|412
9GUX|1|A|G|413
9GUX|1|A|A|414
9GUX|1|A|A|415
9GUX|1|A|G|416
*
9GUX|1|A|U|427
9GUX|1|A|G|428
9GUX|1|A|U|429
9GUX|1|A|A|430
9GUX|1|A|A|431
9GUX|1|A|A|432
9GUX|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS4