IL_9GUX_061

3D structure

PDB id

9GUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUX_061 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.2426

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9GUX|1|A|C|1399
9GUX|1|A|C|1400
9GUX|1|A|G|1401
*
9GUX|1|A|U|1495
9GUX|1|A|C|1496
9GUX|1|A|G|1497

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S18

Chain V

30S ribosomal protein S21