IL_9GXX_047

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9GXX|1|A|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_047 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.122

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9GXX|1|A|U|1060
9GXX|1|A|G|1061
*
9GXX|1|A|C|1195
9GXX|1|A|A|1196
9GXX|1|A|A|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14

Chain X

mRNA

Chain Y

Transfer RNA; tRNA