IL_9GXX_073

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3742

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GXX|1|a|C|274
9GXX|1|a|C|275
9GXX|1|a|U|276
9GXX|1|a|G|277
9GXX|1|a|A|278
9GXX|1|a|A|279
9GXX|1|a|U|280
9GXX|1|a|C|281
*
9GXX|1|a|G|359
9GXX|1|a|U|360
9GXX|1|a|G|361
9GXX|1|a|A|362
9GXX|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains