IL_9GXX_093

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_093 not in the Motif Atlas

Homologous match to IL_4WF9_034

Geometric discrepancy: 0.1954

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9GXX|1|a|U|870
9GXX|1|a|U|871
9GXX|1|a|U|872
*
9GXX|1|a|A|905
9GXX|1|a|U|906
9GXX|1|a|G|907

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16