3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
CGAAG*CUAAG
Length
10 nucleotides
Bulged bases
9GXX|1|a|A|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GXX_113 not in the Motif Atlas
Homologous match to IL_5J7L_295
Geometric discrepancy: 0.1309
The information below is about IL_5J7L_295
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

9GXX|1|a|C|1417
9GXX|1|a|G|1418
9GXX|1|a|A|1419
9GXX|1|a|A|1420
9GXX|1|a|G|1421
*
9GXX|1|a|C|1577
9GXX|1|a|U|1578
9GXX|1|a|A|1579
9GXX|1|a|A|1580
9GXX|1|a|G|1581

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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