IL_9GXX_158
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 9GXX|1|a|A|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GXX_158 not in the Motif Atlas
- Homologous match to IL_7A0S_091
- Geometric discrepancy: 0.0932
- The information below is about IL_7A0S_091
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_94991.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 15
Unit IDs
9GXX|1|a|U|2522
9GXX|1|a|G|2523
*
9GXX|1|a|C|2540
9GXX|1|a|A|2541
9GXX|1|a|A|2542
9GXX|1|a|G|2543
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: