IL_9GY4_027

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9GY4|1|5|A|932, 9GY4|1|5|C|934, 9GY4|1|5|A|935, 9GY4|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|5|A|732
9GY4|1|5|A|733
9GY4|1|5|G|734
9GY4|1|5|G|735
*
9GY4|1|5|C|928
9GY4|1|5|A|929
9GY4|1|5|G|930
9GY4|1|5|C|931
9GY4|1|5|A|932
9GY4|1|5|G|933
9GY4|1|5|C|934
9GY4|1|5|A|935
9GY4|1|5|C|936
9GY4|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a