IL_9GY4_034

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

9GY4|1|5|G|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_034 not in the Motif Atlas

Geometric match to IL_4V9F_041

Geometric discrepancy: 0.395

The information below is about IL_4V9F_041

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9GY4|1|5|C|1096
9GY4|1|5|C|1097
*
9GY4|1|5|G|1198
9GY4|1|5|G|1199
9GY4|1|5|G|1200

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21