IL_9GY4_035

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_035 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2078

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9GY4|1|5|C|1172
9GY4|1|5|G|1173
9GY4|1|5|G|1174
9GY4|1|5|A|1175
*
9GY4|1|5|U|1186
9GY4|1|5|G|1187
9GY4|1|5|C|1188
9GY4|1|5|G|1189

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5