IL_9GY4_054

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

9GY4|1|5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_054 not in the Motif Atlas

Homologous match to IL_8CRE_040

Geometric discrepancy: 0.1159

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9GY4|1|5|A|1723
9GY4|1|5|G|1724
9GY4|1|5|U|1725
*
9GY4|1|5|A|1838
9GY4|1|5|U|1839

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29