IL_9GY4_066
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_066 not in the Motif Atlas
- Homologous match to IL_8CRE_052
- Geometric discrepancy: 0.1935
- The information below is about IL_8CRE_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9GY4|1|5|C|1911
9GY4|1|5|G|1912
9GY4|1|5|C|1913
9GY4|1|5|C|1914
9GY4|1|5|C|1915
9GY4|1|5|G|1916
9GY4|1|5|A|1917
9GY4|1|5|U|1918
*
9GY4|1|5|G|2064
9GY4|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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