IL_9GY4_073

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGGCC*GAAUC

Length

11 nucleotides

Bulged bases

9GY4|1|5|G|1975, 9GY4|1|5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|5|G|1973
9GY4|1|5|U|1974
9GY4|1|5|G|1975
9GY4|1|5|G|1976
9GY4|1|5|C|1977
9GY4|1|5|C|1978
*
9GY4|1|5|G|1989
9GY4|1|5|A|1990
9GY4|1|5|A|1991
9GY4|1|5|U|1992
9GY4|1|5|C|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

Large ribosomal subunit protein uL11