IL_9GY4_080
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_080 not in the Motif Atlas
- Homologous match to IL_8CRE_065
- Geometric discrepancy: 0.0952
- The information below is about IL_8CRE_065
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9GY4|1|5|G|2358
9GY4|1|5|U|2359
9GY4|1|5|A|2360
9GY4|1|5|G|2361
9GY4|1|5|U|2362
9GY4|1|5|A|2363
9GY4|1|5|G|2364
*
9GY4|1|5|C|3858
9GY4|1|5|G|3859
9GY4|1|5|A|3860
9GY4|1|5|A|3861
9GY4|1|5|A|3862
9GY4|1|5|C|3863
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
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