IL_9GY4_088

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

9GY4|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_088 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1545

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9GY4|1|5|C|2646
9GY4|1|5|A|2647
9GY4|1|5|G|2648
*
9GY4|1|5|C|2685
9GY4|1|5|G|2686
9GY4|1|5|U|2687
9GY4|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34