IL_9GY4_090
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|U|2661, 9GY4|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_090 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.123
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|U|2656
9GY4|1|5|G|2657
9GY4|1|5|G|2658
9GY4|1|5|A|2659
9GY4|1|5|A|2660
9GY4|1|5|U|2661
9GY4|1|5|G|2662
*
9GY4|1|5|C|2672
9GY4|1|5|G|2673
9GY4|1|5|A|2674
9GY4|1|5|G|2675
9GY4|1|5|A|2676
9GY4|1|5|G|2677
9GY4|1|5|A|2678
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lp
- 60S ribosomal protein L37a
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