IL_9GY4_096
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9GY4|1|5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_096 not in the Motif Atlas
- Homologous match to IL_8P9A_306
- Geometric discrepancy: 0.1134
- The information below is about IL_8P9A_306
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
9GY4|1|5|A|2850
9GY4|1|5|G|2851
9GY4|1|5|U|2852
9GY4|1|5|C|2853
9GY4|1|5|G|2854
9GY4|1|5|G|2855
*
9GY4|1|5|C|3837
9GY4|1|5|U|3838
9GY4|1|5|G|3839
9GY4|1|5|U|3840
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
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