IL_9GY4_101
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|A|3663, 9GY4|1|5|U|3679, 9GY4|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_101 not in the Motif Atlas
- Homologous match to IL_8CRE_088
- Geometric discrepancy: 0.1345
- The information below is about IL_8CRE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20047.1
- Basepair signature
- cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GY4|1|5|C|3660
9GY4|1|5|G|3661
9GY4|1|5|A|3662
9GY4|1|5|A|3663
9GY4|1|5|G|3664
9GY4|1|5|G|3665
*
9GY4|1|5|U|3677
9GY4|1|5|G|3678
9GY4|1|5|U|3679
9GY4|1|5|U|3680
9GY4|1|5|G|3681
9GY4|1|5|A|3682
9GY4|1|5|C|3683
9GY4|1|5|G|3684
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
Coloring options: