IL_9GY4_108

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9GY4|1|5|A|3785, 9GY4|1|5|C|3791, 9GY4|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_108 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.1187

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9GY4|1|5|C|3781
9GY4|1|5|C|3782
9GY4|1|5|A|3783
9GY4|1|5|A|3784
9GY4|1|5|A|3785
9GY4|1|5|U|3786
9GY4|1|5|G|3787
9GY4|1|5|C|3788
9GY4|1|5|C|3789
9GY4|1|5|U|3790
9GY4|1|5|C|3791
9GY4|1|5|G|3792
*
9GY4|1|5|C|3808
9GY4|1|5|G|3809
9GY4|1|5|C|3810
9GY4|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains