IL_9GY4_112

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9GY4|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_112 not in the Motif Atlas

Homologous match to IL_8CRE_099

Geometric discrepancy: 0.1274

The information below is about IL_8CRE_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9GY4|1|5|G|3916
9GY4|1|5|A|3917
*
9GY4|1|5|U|4384
9GY4|1|5|A|4385
9GY4|1|5|C|4386
9GY4|1|5|C|4387

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Nascent chain

Chain G

Transfer RNA; tRNA

Chain a

60S ribosomal protein L8