IL_9GY4_134

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9GY4|1|5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_134 not in the Motif Atlas

Geometric match to IL_8P9A_399

Geometric discrepancy: 0.2845

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9GY4|1|5|C|4537
9GY4|1|5|G|4538
*
9GY4|1|5|C|4547
9GY4|1|5|A|4548
9GY4|1|5|G|4549

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

Transfer RNA; tRNA

Chain LI

Ribosomal protein uL16-like

Chain a

60S ribosomal protein L8