IL_9GY4_154

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

9GY4|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_154 not in the Motif Atlas

Geometric match to IL_9DFE_107

Geometric discrepancy: 0.2233

The information below is about IL_9DFE_107

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9GY4|1|5|C|4996
9GY4|1|5|G|4997
*
9GY4|1|5|U|5053
9GY4|1|5|C|5054
9GY4|1|5|G|5055

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

E3 ubiquitin-protein ligase listerin

Chain LB

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L31