IL_9GY4_156

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

9GY4|1|5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|5|U|5003
9GY4|1|5|C|5004
9GY4|1|5|G|5005
9GY4|1|5|U|5006
9GY4|1|5|A|5007
9GY4|1|5|C|5008
9GY4|1|5|G|5009
*
9GY4|1|5|U|5039
9GY4|1|5|U|5040
9GY4|1|5|G|5041
9GY4|1|5|A|5042
9GY4|1|5|A|5043
9GY4|1|5|A|5044

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

E3 ubiquitin-protein ligase listerin

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31