IL_9H21_002

3D structure

PDB id

9H21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 in complex with tracrRNA and crRNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

9H21|1|C|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H21_002 not in the Motif Atlas

Homologous match to IL_7QQX_002

Geometric discrepancy: 0.1001

The information below is about IL_7QQX_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9H21|1|C|G|28
9H21|1|C|C|29
*
9H21|1|C|G|33
9H21|1|C|U|34
9H21|1|C|C|35

Current chains

Chain C

tracrRNA (62-MER)

Nearby chains

Chain B

crRNA (5'-R(P*GP*AP*AP*GP*AP*GP*GP*AP*CP*AP*GP*UP*UP*UP*UP*AP*GP*AP*GP*CP*UP*G)-3')

Chain A

CRISPR-associated endonuclease Cas9