IL_9H3N_031

3D structure

PDB id

9H3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9H3N|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3N_031 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.274

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9H3N|1|A|G|1202
9H3N|1|A|U|1203
9H3N|1|A|A|1204
9H3N|1|A|A|1205
9H3N|1|A|G|1206
*
9H3N|1|A|U|1240
9H3N|1|A|A|1241
9H3N|1|A|U|1242
9H3N|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15