IL_9H3R_065

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CCU*AAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3R_065 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3778

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9H3R|1|A|C|2103
9H3R|1|A|C|2104
9H3R|1|A|U|2105
*
9H3R|1|A|A|2183
9H3R|1|A|A|2184
9H3R|1|A|U|2185
9H3R|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains