IL_9H3R_073

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

ACAG*CCUCGAU

Length

11 nucleotides

Bulged bases

9H3R|1|A|C|2501, 9H3R|1|A|G|2502, 9H3R|1|A|A|2503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3R_073 not in the Motif Atlas

Geometric match to IL_8B0X_032

Geometric discrepancy: 0.3965

The information below is about IL_8B0X_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9H3R|1|A|A|2451
9H3R|1|A|C|2452
9H3R|1|A|A|2453
9H3R|1|A|G|2454
*
9H3R|1|A|C|2498
9H3R|1|A|C|2499
9H3R|1|A|U|2500
9H3R|1|A|C|2501
9H3R|1|A|G|2502
9H3R|1|A|A|2503
9H3R|1|A|U|2504

Current chains

Chain A

23S ribosomal RNA

Nearby chains