IL_9H3S_011

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

9H3S|1|A|A|504, 9H3S|1|A|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_011 not in the Motif Atlas

Homologous match to IL_9DFE_012

Geometric discrepancy: 0.1376

The information below is about IL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

9H3S|1|A|G|481
9H3S|1|A|A|482
9H3S|1|A|A|483
9H3S|1|A|C|484
*
9H3S|1|A|G|496
9H3S|1|A|A|497
9H3S|1|A|G|498
9H3S|1|A|U|499
9H3S|1|A|G|500
9H3S|1|A|A|501
9H3S|1|A|A|502
9H3S|1|A|A|503
9H3S|1|A|A|504
9H3S|1|A|A|505
9H3S|1|A|G|506
9H3S|1|A|A|507
9H3S|1|A|A|508
9H3S|1|A|C|509

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein uL24